Centre Publications

2009


Tan YF, O'Toole N, Taylor NL, Millar AH (2009) Divalent metal ions in plant mitochondria and their role in interactions with protein and oxidative stress induced damage to respiratory function Plant Physiology (in press) PUBMED Impact Factor: 6
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Zhen, Ngo Que-Minh, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B and Ecker JR (Nov 2009) Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462(7271): 315-322 PUBMED doi:10.1038/nature08514 Impact Factor: 31.4
Ito J, Taylor NL, Castleden I, Weckwerth W, Millar AH and Heazlewood JL (2009) A survey of the Arabidopsis thaliana mitochondrial phosphoproteome Proteomics Proteomics 9(17):4229-4240 PUBMED
Kühn K, Richter U, Meyer EH, Delannoy E, Falcon de Longevialle A, O'Toole N, Börner T, Millar AH, Small ID and Whelan J (2009) Phage-Type RNA Polymerase RPOTmp Performs Gene-Specific Transcription in Mitochondria of Arabidopsis thaliana Plant Cell (in press) PUBMED Impact Factor: 11
Baer B, Eubel H, Taylor NL, O'Toole N and Millar AH (2009) Insights into female sperm storage from the spermathecal fluid proteome of the honeybee Apis mellifera Genome Biology 10(6):R67 PUBMED Impact Factor: 10
Carrie C, Kühn K, Murcha M, Duncan O, Small I, O'Toole N and Whelan J 2009 Approaches to Defining Dual-Targeted Proteins in Arabidopsis The Plant Journal 57(6):1128-39 PUBMED Impact Factor: 7

2008


Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM and Millar AH. (October 17, 2008) Novel proteins, putative membrane transporters and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes. Plant Physiology 148:1809-29 PUBMED Impact Factor: 6
Zhu Z, Tovchigrechko A, Baronova T, Gao Y, Douguet D, O'Toole N and Vakser IA. (2008) Large-scale structural modeling of protein complexes at low resolution. J Bioinform Comput Biol. 6(4):789-810. PUBMED Impact Factor: Unknown
O'Toole N, Hattori M, Andres C, Iida K, Lurin C, Schmitz-Linneweber C, Sugita M and Small I (June, 2008) On the expansion of the pentatricopeptide repeat gene family in plants. Molecular Biology and Evolution 25(6):1120-1128 PUBMED Impact Factor: 7
Lee C-P, Eubel H, O'Toole N and Millar AH (April 2, 2008) Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Molecular & Cellular Proteomics 7(7):1297-316 PUBMED Impact Factor: 10
O'Toole N and Vakser I (2008). Large-scale characteristics of the energy landscape in protein-protein interactions. Proteins-Structure Function and Bioinformatics 71, 144-52 PUBMED Impact Factor: 4
Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH and Ecker JR (June, 2008) A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development. Developmental Cell 14(6):854-866 PUBMED Impact Factor: 15
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH and Ecker JR (April 17, 2008) Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis Cell 133(3):523-36 PUBMED Impact Factor: 29

2007


Narsai R, Howell KA, Millar AH, O'Toole N, Small I and Whelan J (2007) Genome-Wide Analysis of mRNA Decay Rates and their Determinants in Arabidopsis thaliana. The Plant Cell 19, 3418-3436 PUBMED Impact Factor: 11
Geisler-Lee J, O'Toole N, Ammar R, Provart NJ, Millar AH and Geisler M (2007) A Predicted Interactome for Arabidopsis. Plant Physiology 145, 317-29 PUBMED Impact Factor: 6
Murcha MW, Elhafez D, Lister R, Tonti-Filippini J, Baumgartner M, Philippar K, Carrie C, Mokranjac D, Soll J and Whelan J (2007) Characterisation of the preprotein and amino acid transporter family in Arabidopsis. Plant Physiology 143, 199-212 PUBMED Impact Factor: 6
Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH (2007) SUBA: The Arabidopsis Subcellular Database. Nucleic Acids Research 35, D213-8. PUBMED Impact Factor: 8
Pusnik M., Small I., Read L.K., Fabbro T., and Schneider A. (2007). Pentatricopeptide repeat proteins in T. brucei function in mitochondrial ribosomes. Molecular and Cellular Biology 27, 6876-88 PUBMED Impact Factor: 7
Heazlewood JL, Tonti-Filippini J, Verboom RE and Millar AH (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiology 139, 598-609 PUBMED Impact Factor: 6
News
According to Time magazine:

Centre contributes to the second most important scientific discovery of 2009!

Centre contributes to the second most important scientific discovery of 2009

From the original Time article by EBEN HARRELL

The Top 10 of Everything for 2009

2. The Human Epigenome, Decoded

DNA

The decoding of the human genome nearly a decade ago fueled expectations that an understanding of all human hereditary influences was within sight. But the connections between genes and, say, disease turned out to be far more complicated than imagined. What has since emerged is a new frontier in the study of genetic signaling known as epigenetics, which holds that the behavior of genes can be modified by environmental influences and that those changes can be passed down through generations. So people who smoke cigarettes in their youth, for example, sustain certain epigenetic changes, which may then increase the risk that their children's children will reach puberty early. In October, a team led by Joseph Ecker at the Salk Institute in La Jolla, Calif., studied human skin and stem cells to produce the first detailed map of the human epigenome. By comparing this with the epigenomes of diseased cells, scientists will be able to work out how glitches in the epigenome may lead to cancers and other diseases. The study, which was published in the journal Nature, is a giant leap in geneticists' quest to better understand the strange witches' brew of nature and nurture that makes us who we are.


Nature Paper

Breaking News!

October 2009: After working on the Arabidopsis methylome Ryan Lister, Julian Tonti-Filippini and Harvey Millar have co-authored a Nature Paper about the the human methylome!
Read More...

An overview for the general reader can be found at the Economist

Software